Site-2 Protease from Methanocaldococcus jannaschii
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF02163
PDB ID: 3B4R
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.2 Å
Number of TM segments = 10
Sequence positions:
A: 15-34|37-58|95-120|124-154|166-187|189-208
B: 16-34|37-58|95-118|123-150
Tilt angles:
A - Segment: 15-34 - Tilt: 31.1°
A - Segment: 37-58 - Tilt: 37.7°
A - Segment: 95-120 - Tilt: 43.2°
A - Segment: 124-154 - Tilt: 49.3°
A - Segment: 166-187 - Tilt: 34.6°
A - Segment: 189-208 - Tilt: 23.7°
B - Segment: 16-34 - Tilt: 20.7°
B - Segment: 37-58 - Tilt: 36.3°
B - Segment: 95-118 - Tilt: 37.1°
B - Segment: 123-150 - Tilt: 37.5°
Structural assessment:
MAIDEN score = -96.6879
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]