Site-2 Protease from Methanocaldococcus jannaschii
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02163
PDB ID: 3B4R
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.0 Å
Number of TM segments = 10
Sequence positions:
A: 14-29|38-55|93-110|123-148|166-184|189-203
B: 233-248|255-270|314-329|341-363
Tilt angles:
A - Segment: 14-29 - Tilt: 21.8°
A - Segment: 38-55 - Tilt: 37.0°
A - Segment: 93-110 - Tilt: 43.1°
A - Segment: 123-148 - Tilt: 52.5°
A - Segment: 166-184 - Tilt: 34.2°
A - Segment: 189-203 - Tilt: 26.0°
B - Segment: 233-248 - Tilt: 11.9°
B - Segment: 255-270 - Tilt: 31.8°
B - Segment: 314-329 - Tilt: 23.3°
B - Segment: 341-363 - Tilt: 43.2°
Structural assessment:
MAIDEN score = -43.3277
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]