MsbA from Vibrio cholerae
Organism: Vibrio cholerae
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00664
PDB ID: 3B5X
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 27.9 Å
Number of TM segments = 12
Sequence positions:
A: 28-47|66-85|144-166|168-188|245-263|284-302
B: 27-46|67-85|143-162|169-189|244-263|285-303
Tilt angles:
A - Segment: 28-47 - Tilt: 27.6°
A - Segment: 66-85 - Tilt: 7.4°
A - Segment: 144-166 - Tilt: 37.6°
A - Segment: 168-188 - Tilt: 25.4°
A - Segment: 245-263 - Tilt: 25.4°
A - Segment: 284-302 - Tilt: 7.2°
B - Segment: 27-46 - Tilt: 21.4°
B - Segment: 67-85 - Tilt: 21.7°
B - Segment: 143-162 - Tilt: 21.7°
B - Segment: 169-189 - Tilt: 22.1°
B - Segment: 244-263 - Tilt: 16.5°
B - Segment: 285-303 - Tilt: 11.2°
Structural assessment:
MAIDEN score = -44.2774
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]