MsbA from Vibrio cholerae
Organism: Vibrio cholerae
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00664
PDB ID: 3B5X
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 29.0 Å
Number of TM segments = 12
Sequence positions:
A: 19-37|57-76|134-156|161-182|230-253|277-295
B: 587-607|632-654|703-724|732-752|806-826|849-868
Tilt angles:
A - Segment: 19-37 - Tilt: 19.6°
A - Segment: 57-76 - Tilt: 12.5°
A - Segment: 134-156 - Tilt: 22.5°
A - Segment: 161-182 - Tilt: 21.2°
A - Segment: 230-253 - Tilt: 34.0°
A - Segment: 277-295 - Tilt: 13.2°
B - Segment: 587-607 - Tilt: 36.5°
B - Segment: 632-654 - Tilt: 13.8°
B - Segment: 703-724 - Tilt: 32.1°
B - Segment: 732-752 - Tilt: 21.4°
B - Segment: 806-826 - Tilt: 13.7°
B - Segment: 849-868 - Tilt: 16.9°
Structural assessment:
MAIDEN score = -35.6707
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]