Transmembrane domain of M2 protein and Amantadine complex
Organism: Influenza virus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00599
PDB ID: 3C9J
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.0 Å
Number of TM segments = 4
Sequence positions:
A: 5-22
C: 55-74
B: 30-48
D: 80-97
Tilt angles:
A - Segment: 5-22 - Tilt: 39.4°
C - Segment: 55-74 - Tilt: 43.2°
B - Segment: 30-48 - Tilt: 34.1°
D - Segment: 80-97 - Tilt: 41.8°
Structural assessment:
MAIDEN score = -41.4964
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]