Sodium/Sugar symporter with bound Galactose from Vibrio parahaemolyticus
Organism: Vibrio parahaemolyticus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00474
PDB ID: 3DH4
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.8 Å
Number of TM segments = 21
Sequence positions:
A: 85-99|132-151|249-268|285-298|356-374|400-415|423-440|460-473|477-492|523-537
B: 60-74|82-95|129-151|245-264|290-304|348-377|398-414|423-441|457-471|478-494|530-544
Tilt angles:
A - Segment: 85-99 - Tilt: 12.8°
A - Segment: 132-151 - Tilt: 37.4°
A - Segment: 249-268 - Tilt: 45.8°
A - Segment: 285-298 - Tilt: 23.7°
A - Segment: 356-374 - Tilt: 45.0°
A - Segment: 400-415 - Tilt: 18.1°
A - Segment: 423-440 - Tilt: 37.1°
A - Segment: 460-473 - Tilt: 23.0°
A - Segment: 477-492 - Tilt: 13.4°
A - Segment: 523-537 - Tilt: 27.6°
B - Segment: 60-74 - Tilt: 8.1°
B - Segment: 82-95 - Tilt: 15.7°
B - Segment: 129-151 - Tilt: 52.8°
B - Segment: 245-264 - Tilt: 15.9°
B - Segment: 290-304 - Tilt: 13.3°
B - Segment: 348-377 - Tilt: 63.6°
B - Segment: 398-414 - Tilt: 32.4°
B - Segment: 423-441 - Tilt: 38.2°
B - Segment: 457-471 - Tilt: 20.1°
B - Segment: 478-494 - Tilt: 31.6°
B - Segment: 530-544 - Tilt: 24.1°
Structural assessment:
MAIDEN score = -214.1866
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]