Sodium/Sugar symporter with bound Galactose from Vibrio parahaemolyticus
Organism: Vibrio parahaemolyticus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00474
PDB ID: 3DH4
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.7 Å
Number of TM segments = 26
Sequence positions:
A: 28-45|53-66|103-125|134-149|152-168|209-229|253-268|314-338|365-382|387-405|424-438|440-457|492-508
B: 540-557|565-579|615-634|646-661|664-679|721-741|765-779|826-851|877-892|899-917|936-950|952-969|1004-1020
Tilt angles:
A - Segment: 28-45 - Tilt: 17.3°
A - Segment: 53-66 - Tilt: 3.6°
A - Segment: 103-125 - Tilt: 48.3°
A - Segment: 134-149 - Tilt: 16.8°
A - Segment: 152-168 - Tilt: 19.0°
A - Segment: 209-229 - Tilt: 24.6°
A - Segment: 253-268 - Tilt: 14.4°
A - Segment: 314-338 - Tilt: 56.1°
A - Segment: 365-382 - Tilt: 28.3°
A - Segment: 387-405 - Tilt: 32.2°
A - Segment: 424-438 - Tilt: 3.6°
A - Segment: 440-457 - Tilt: 9.1°
A - Segment: 492-508 - Tilt: 25.9°
B - Segment: 540-557 - Tilt: 17.0°
B - Segment: 565-579 - Tilt: 7.3°
B - Segment: 615-634 - Tilt: 44.9°
B - Segment: 646-661 - Tilt: 17.3°
B - Segment: 664-679 - Tilt: 23.5°
B - Segment: 721-741 - Tilt: 25.2°
B - Segment: 765-779 - Tilt: 17.4°
B - Segment: 826-851 - Tilt: 54.3°
B - Segment: 877-892 - Tilt: 20.6°
B - Segment: 899-917 - Tilt: 31.3°
B - Segment: 936-950 - Tilt: 4.4°
B - Segment: 952-969 - Tilt: 8.0°
B - Segment: 1004-1020 - Tilt: 26.7°
Structural assessment:
MAIDEN score = -167.0573
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]