Protein-translocation complex formed by the SecY channel and the SecA ATPase
Organism: Thermotoga maritima
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3DIN
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.5 Å
Number of TM segments = 13
Sequence positions:
C: 17-34|73-99|118-133|160-179|182-201|213-229|268-282|303-320|363-381|389-405
E: 13-30|53-69
D: 33-58
Tilt angles:
C - Segment: 17-34 - Tilt: 32.6°
C - Segment: 73-99 - Tilt: 34.3°
C - Segment: 118-133 - Tilt: 1.3°
C - Segment: 160-179 - Tilt: 27.4°
C - Segment: 182-201 - Tilt: 32.5°
C - Segment: 213-229 - Tilt: 39.2°
C - Segment: 268-282 - Tilt: 20.5°
C - Segment: 303-320 - Tilt: 24.3°
C - Segment: 363-381 - Tilt: 31.7°
C - Segment: 389-405 - Tilt: 28.0°
E - Segment: 13-30 - Tilt: 35.3°
E - Segment: 53-69 - Tilt: 20.0°
D - Segment: 33-58 - Tilt: 51.6°
Structural assessment:
MAIDEN score = -102.3987
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]