Protein-translocation complex formed by the SecY channel and the SecA ATPase
Organism: Thermotoga maritima
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3DIN
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.4 Å
Number of TM segments = 13
Sequence positions:
C: 826-841|862-880|910-923|947-967|971-985|1005-1018|1057-1071|1092-1106|1152-1165|1180-1195
E: 1270-1286|1314-1327
D: 1232-1254
Tilt angles:
C - Segment: 826-841 - Tilt: 41.6°
C - Segment: 862-880 - Tilt: 8.8°
C - Segment: 910-923 - Tilt: 15.0°
C - Segment: 947-967 - Tilt: 53.7°
C - Segment: 971-985 - Tilt: 21.9°
C - Segment: 1005-1018 - Tilt: 24.7°
C - Segment: 1057-1071 - Tilt: 36.4°
C - Segment: 1092-1106 - Tilt: 18.4°
C - Segment: 1152-1165 - Tilt: 22.9°
C - Segment: 1180-1195 - Tilt: 26.9°
E - Segment: 1270-1286 - Tilt: 37.7°
E - Segment: 1314-1327 - Tilt: 12.3°
D - Segment: 1232-1254 - Tilt: 53.8°
Structural assessment:
MAIDEN score = -89.5017
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]