Sec61 in the Canine ribosome-channel complex from the endoplasmic reticulum
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3DKN
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 12
Sequence positions:
A: 27-39|73-88|109-122|148-162|165-180|215-227|255-269|316-331|380-395|397-410
C: 26-39
B: 33-51
Tilt angles:
A - Segment: 27-39 - Tilt: 17.5°
A - Segment: 73-88 - Tilt: 45.2°
A - Segment: 109-122 - Tilt: 18.1°
A - Segment: 148-162 - Tilt: 29.1°
A - Segment: 165-180 - Tilt: 34.3°
A - Segment: 215-227 - Tilt: 13.3°
A - Segment: 255-269 - Tilt: 31.7°
A - Segment: 316-331 - Tilt: 33.1°
A - Segment: 380-395 - Tilt: 35.5°
A - Segment: 397-410 - Tilt: 14.8°
C - Segment: 26-39 - Tilt: 34.6°
B - Segment: 33-51 - Tilt: 50.2°
Structural assessment:
MAIDEN score = -60.0609
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]