Sec61 in the Canine ribosome-channel complex from the endoplasmic reticulum
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3DKN
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.0 Å
Number of TM segments = 10
Sequence positions:
A: 98-113|124-152|180-196|209-226|236-256|279-295|324-344|381-397
C: 575-591
B: 531-556
Tilt angles:
A - Segment: 98-113 - Tilt: 29.8°
A - Segment: 124-152 - Tilt: 31.2°
A - Segment: 180-196 - Tilt: 12.1°
A - Segment: 209-226 - Tilt: 36.5°
A - Segment: 236-256 - Tilt: 27.6°
A - Segment: 279-295 - Tilt: 8.7°
A - Segment: 324-344 - Tilt: 42.0°
A - Segment: 381-397 - Tilt: 31.1°
C - Segment: 575-591 - Tilt: 10.1°
B - Segment: 531-556 - Tilt: 53.3°
Structural assessment:
MAIDEN score = -41.6508
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]