Mouse VDAC1 at 2.3 Å resolution
Organism: Mus musculus
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF01459
PDB ID: 3EMN
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.2 Å
Number of TM segments = 19
Sequence positions:
X: 4-24|26-34|38-46|55-63|68-76|81-88|94-101|112-119|122-129|138-146|148-155|167-174|178-184|190-196|202-209|218-225|231-238|242-252|254-263
Tilt angles:
X - Segment: 4-24 - Tilt: 57.0°
X - Segment: 26-34 - Tilt: 39.1°
X - Segment: 38-46 - Tilt: 41.0°
X - Segment: 55-63 - Tilt: 39.4°
X - Segment: 68-76 - Tilt: 37.6°
X - Segment: 81-88 - Tilt: 33.4°
X - Segment: 94-101 - Tilt: 38.3°
X - Segment: 112-119 - Tilt: 33.5°
X - Segment: 122-129 - Tilt: 38.9°
X - Segment: 138-146 - Tilt: 38.2°
X - Segment: 148-155 - Tilt: 31.7°
X - Segment: 167-174 - Tilt: 24.1°
X - Segment: 178-184 - Tilt: 27.2°
X - Segment: 190-196 - Tilt: 29.1°
X - Segment: 202-209 - Tilt: 29.8°
X - Segment: 218-225 - Tilt: 39.7°
X - Segment: 231-238 - Tilt: 40.5°
X - Segment: 242-252 - Tilt: 48.9°
X - Segment: 254-263 - Tilt: 46.6°
Structural assessment:
MAIDEN score = 515.4029
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]