ApcT Transporter
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00324
PDB ID: 3GIA
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.6 Å
Number of TM segments = 12
Sequence positions:
A: 12-28|39-54|89-107|124-138|148-165|189-203|224-238|273-290|320-336|338-354|373-390|399-413
Tilt angles:
A - Segment: 12-28 - Tilt: 16.5°
A - Segment: 39-54 - Tilt: 13.7°
A - Segment: 89-107 - Tilt: 43.0°
A - Segment: 124-138 - Tilt: 18.2°
A - Segment: 148-165 - Tilt: 49.7°
A - Segment: 189-203 - Tilt: 34.3°
A - Segment: 224-238 - Tilt: 11.1°
A - Segment: 273-290 - Tilt: 46.9°
A - Segment: 320-336 - Tilt: 28.4°
A - Segment: 338-354 - Tilt: 39.9°
A - Segment: 373-390 - Tilt: 36.9°
A - Segment: 399-413 - Tilt: 28.2°
Structural assessment:
MAIDEN score = -106.4626
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]