Ribosome-SecYE complex in the membrane environment
Organism: Escherichia coli
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3J01
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 34.2 Å
Number of TM segments = 13
Sequence positions:
A: 21-56|64-92|117-140|144-179|184-205|216-234|271-292|306-329|372-394|398-418
B: 16-34|47-71|94-124
Tilt angles:
A - Segment: 21-56 - Tilt: 34.5°
A - Segment: 64-92 - Tilt: 25.4°
A - Segment: 117-140 - Tilt: 14.4°
A - Segment: 144-179 - Tilt: 16.9°
A - Segment: 184-205 - Tilt: 25.2°
A - Segment: 216-234 - Tilt: 16.3°
A - Segment: 271-292 - Tilt: 26.7°
A - Segment: 306-329 - Tilt: 31.1°
A - Segment: 372-394 - Tilt: 21.4°
A - Segment: 398-418 - Tilt: 21.4°
B - Segment: 16-34 - Tilt: 7.0°
B - Segment: 47-71 - Tilt: 15.3°
B - Segment: 94-124 - Tilt: 49.7°
Structural assessment:
MAIDEN score = -55.9221
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]