Ribosome-SecYE complex in the membrane environment
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3J01
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.5 Å
Number of TM segments = 13
Sequence positions:
A: 3035-3066|3093-3108|3134-3153|3168-3196|3200-3216|3234-3250|3290-3313|3323-3342|3392-3411|3416-3437
B: 3467-3484|3493-3508|3542-3560
Tilt angles:
A - Segment: 3035-3066 - Tilt: 33.4°
A - Segment: 3093-3108 - Tilt: 14.1°
A - Segment: 3134-3153 - Tilt: 26.6°
A - Segment: 3168-3196 - Tilt: 39.4°
A - Segment: 3200-3216 - Tilt: 13.7°
A - Segment: 3234-3250 - Tilt: 11.7°
A - Segment: 3290-3313 - Tilt: 43.8°
A - Segment: 3323-3342 - Tilt: 36.6°
A - Segment: 3392-3411 - Tilt: 1.8°
A - Segment: 3416-3437 - Tilt: 44.1°
B - Segment: 3467-3484 - Tilt: 10.9°
B - Segment: 3493-3508 - Tilt: 19.0°
B - Segment: 3542-3560 - Tilt: 33.5°
Structural assessment:
MAIDEN score = -68.6878
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]