Electron cryo-microscopy of Chikungunya virus
Organism: Chikungunya virus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00869
PDB ID: 3J2W
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 40.0 Å
Number of TM segments = 8
Sequence positions:
E: 2928-2957
G: 3185-3210
F: 3058-3084
H: 3309-3336
Q: 2988-3015
S: 3245-3270
R: 3118-3144
T: 3370-3396
Tilt angles:
E - Segment: 2928-2957 - Tilt: 29.8°
G - Segment: 3185-3210 - Tilt: 18.9°
F - Segment: 3058-3084 - Tilt: 21.4°
H - Segment: 3309-3336 - Tilt: 24.0°
Q - Segment: 2988-3015 - Tilt: 22.1°
S - Segment: 3245-3270 - Tilt: 8.5°
R - Segment: 3118-3144 - Tilt: 4.9°
T - Segment: 3370-3396 - Tilt: 5.8°
Structural assessment:
MAIDEN score = -52.7111
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]