Non-translocating SecY protein channel with the 70S ribosome
Organism: Escherichia coli
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3J45
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.0 Å
Number of TM segments = 10
Sequence positions:
y: 27-44|59-87|124-138|154-171|187-204|221-236|277-295|315-329|378-391|400-414
Tilt angles:
y - Segment: 27-44 - Tilt: 51.5°
y - Segment: 59-87 - Tilt: 14.7°
y - Segment: 124-138 - Tilt: 12.7°
y - Segment: 154-171 - Tilt: 50.9°
y - Segment: 187-204 - Tilt: 45.4°
y - Segment: 221-236 - Tilt: 23.3°
y - Segment: 277-295 - Tilt: 47.7°
y - Segment: 315-329 - Tilt: 14.6°
y - Segment: 378-391 - Tilt: 29.1°
y - Segment: 400-414 - Tilt: 10.3°
Structural assessment:
MAIDEN score = -48.9566
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]