Non-translocating SecY protein channel with the 70S ribosome
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3J45
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 32.7 Å
Number of TM segments = 8
Sequence positions:
y: 71-91|109-130|214-234|265-290|294-328
E: 451-477
G: 494-525|528-547
Tilt angles:
y - Segment: 71-91 - Tilt: 27.5°
y - Segment: 109-130 - Tilt: 19.2°
y - Segment: 214-234 - Tilt: 7.0°
y - Segment: 265-290 - Tilt: 43.1°
y - Segment: 294-328 - Tilt: 34.7°
E - Segment: 451-477 - Tilt: 42.3°
G - Segment: 494-525 - Tilt: 35.9°
G - Segment: 528-547 - Tilt: 14.5°
Structural assessment:
MAIDEN score = -48.5509
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]