SecY protein translocation channel in action
Organism: Escherichia coli
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3J46
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.0 Å
Number of TM segments = 10
Sequence positions:
y: 13-31|81-99|109-125|213-238|271-285|319-342|374-395|400-424
E: 94-111
n: 35-43
Tilt angles:
y - Segment: 13-31 - Tilt: 12.5°
y - Segment: 81-99 - Tilt: 38.3°
y - Segment: 109-125 - Tilt: 22.7°
y - Segment: 213-238 - Tilt: 56.2°
y - Segment: 271-285 - Tilt: 23.0°
y - Segment: 319-342 - Tilt: 46.0°
y - Segment: 374-395 - Tilt: 52.2°
y - Segment: 400-424 - Tilt: 47.9°
E - Segment: 94-111 - Tilt: 26.1°
n - Segment: 35-43 - Tilt: 14.3°
Structural assessment:
MAIDEN score = -31.2214
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]