SecY protein translocation channel in action
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3J46
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 27.0 Å
Number of TM segments = 6
Sequence positions:
y: 47-83|111-140|214-232|372-389|391-424
E: 453-473
Tilt angles:
y - Segment: 47-83 - Tilt: 35.4°
y - Segment: 111-140 - Tilt: 45.4°
y - Segment: 214-232 - Tilt: 16.4°
y - Segment: 372-389 - Tilt: 25.2°
y - Segment: 391-424 - Tilt: 57.7°
E - Segment: 453-473 - Tilt: 40.6°
Structural assessment:
MAIDEN score = -42.2784
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]