TRPV1 ion channel determined by single particle electron cryo-microscopy
Organism: Rattus norvegicus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF06011
PDB ID: 3J5P
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.4 Å
Number of TM segments = 24
Sequence positions:
A: 434-450|476-497|511-528|540-556|568-594|660-682
C: 434-450|476-497|511-528|539-556|572-594|660-682
B: 433-450|476-497|510-528|540-557|568-594|660-682
D: 433-450|476-497|511-528|540-557|568-594|660-682
Tilt angles:
A - Segment: 434-450 - Tilt: 7.6°
A - Segment: 476-497 - Tilt: 40.1°
A - Segment: 511-528 - Tilt: 31.5°
A - Segment: 540-556 - Tilt: 37.7°
A - Segment: 568-594 - Tilt: 48.8°
A - Segment: 660-682 - Tilt: 38.3°
C - Segment: 434-450 - Tilt: 8.0°
C - Segment: 476-497 - Tilt: 38.8°
C - Segment: 511-528 - Tilt: 32.1°
C - Segment: 539-556 - Tilt: 33.2°
C - Segment: 572-594 - Tilt: 47.0°
C - Segment: 660-682 - Tilt: 38.8°
B - Segment: 433-450 - Tilt: 16.4°
B - Segment: 476-497 - Tilt: 39.7°
B - Segment: 510-528 - Tilt: 24.4°
B - Segment: 540-557 - Tilt: 31.0°
B - Segment: 568-594 - Tilt: 49.8°
B - Segment: 660-682 - Tilt: 39.5°
D - Segment: 433-450 - Tilt: 16.7°
D - Segment: 476-497 - Tilt: 38.4°
D - Segment: 511-528 - Tilt: 30.9°
D - Segment: 540-557 - Tilt: 32.2°
D - Segment: 568-594 - Tilt: 50.6°
D - Segment: 660-682 - Tilt: 40.0°
Structural assessment:
MAIDEN score = -263.1440
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]