TRPV1 ion channel in complex with DkTx and RTX determined by single particle electron cryo-microscopy
Organism: Rattus norvegicus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF06011
PDB ID: 3J5Q
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 36.0 Å
Number of TM segments = 16
Sequence positions:
B: 433-455|469-497|565-600|653-683
E: 434-456|468-497|568-600|653-683
D: 433-455|469-497|565-600|653-683
G: 434-456|468-497|568-600|653-683
Tilt angles:
B - Segment: 433-455 - Tilt: 16.2°
B - Segment: 469-497 - Tilt: 40.9°
B - Segment: 565-600 - Tilt: 43.0°
B - Segment: 653-683 - Tilt: 29.3°
E - Segment: 434-456 - Tilt: 10.5°
E - Segment: 468-497 - Tilt: 37.5°
E - Segment: 568-600 - Tilt: 36.6°
E - Segment: 653-683 - Tilt: 28.7°
D - Segment: 433-455 - Tilt: 16.9°
D - Segment: 469-497 - Tilt: 40.0°
D - Segment: 565-600 - Tilt: 43.7°
D - Segment: 653-683 - Tilt: 30.0°
G - Segment: 434-456 - Tilt: 11.4°
G - Segment: 468-497 - Tilt: 36.6°
G - Segment: 568-600 - Tilt: 37.3°
G - Segment: 653-683 - Tilt: 29.3°
Structural assessment:
MAIDEN score = -174.0520
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]