Yeast V-ATPase state 1
Organism: Saccharomyces cerevisiae
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00137
PDB ID: 3J9T
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 40.0 Å
Number of TM segments = 40
Sequence positions:
a: 14-40|51-76|90-116|127-152
S: 14-40|51-76|90-115|126-152
R: 14-39|50-74|90-116|127-151
U: 14-40|50-75|91-116|126-151
T: 14-40|51-75|90-116|126-151
W: 14-40|50-75|90-116|127-151
V: 14-40|51-75|90-116|126-151
Y: 13-39|51-76|89-116|127-153
X: 13-39|51-75|90-115|127-152
Z: 14-40|51-75|90-115|126-151
Tilt angles:
a - Segment: 14-40 - Tilt: 6.5°
a - Segment: 51-76 - Tilt: 7.2°
a - Segment: 90-116 - Tilt: 3.7°
a - Segment: 127-152 - Tilt: 7.9°
S - Segment: 14-40 - Tilt: 3.4°
S - Segment: 51-76 - Tilt: 5.2°
S - Segment: 90-115 - Tilt: 5.2°
S - Segment: 126-152 - Tilt: 2.0°
R - Segment: 14-39 - Tilt: 10.4°
R - Segment: 50-74 - Tilt: 11.6°
R - Segment: 90-116 - Tilt: 5.1°
R - Segment: 127-151 - Tilt: 10.8°
U - Segment: 14-40 - Tilt: 6.2°
U - Segment: 50-75 - Tilt: 9.6°
U - Segment: 91-116 - Tilt: 10.9°
U - Segment: 126-151 - Tilt: 8.6°
T - Segment: 14-40 - Tilt: 6.0°
T - Segment: 51-75 - Tilt: 12.8°
T - Segment: 90-116 - Tilt: 2.3°
T - Segment: 126-151 - Tilt: 6.4°
W - Segment: 14-40 - Tilt: 6.1°
W - Segment: 50-75 - Tilt: 7.2°
W - Segment: 90-116 - Tilt: 6.7°
W - Segment: 127-151 - Tilt: 11.9°
V - Segment: 14-40 - Tilt: 5.9°
V - Segment: 51-75 - Tilt: 10.6°
V - Segment: 90-116 - Tilt: 5.2°
V - Segment: 126-151 - Tilt: 5.2°
Y - Segment: 13-39 - Tilt: 5.4°
Y - Segment: 51-76 - Tilt: 4.9°
Y - Segment: 89-116 - Tilt: 7.4°
Y - Segment: 127-153 - Tilt: 3.3°
X - Segment: 13-39 - Tilt: 6.9°
X - Segment: 51-75 - Tilt: 11.9°
X - Segment: 90-115 - Tilt: 3.4°
X - Segment: 127-152 - Tilt: 6.6°
Z - Segment: 14-40 - Tilt: 4.0°
Z - Segment: 51-75 - Tilt: 11.4°
Z - Segment: 90-115 - Tilt: 6.1°
Z - Segment: 126-151 - Tilt: 9.5°
Structural assessment:
MAIDEN score = -489.7514
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]