Yeast V-ATPase state 1
Organism: Saccharomyces cerevisiae
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00137
PDB ID: 3J9T
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 40.0 Å
Number of TM segments = 40
Sequence positions:
a: 7304-7330|7342-7367|7380-7406|7417-7443
S: 6854-6880|6891-6916|6930-6956|6967-6992
R: 6104-6130|6141-6165|6181-6206|6217-6242
U: 6255-6280|6291-6315|6331-6357|6367-6392
T: 6555-6580|6592-6616|6631-6656|6667-6692
W: 6703-6730|6741-6766|6779-6806|6818-6842
V: 6405-6430|6442-6466|6481-6506|6517-6542
Y: 5953-5978|5992-6017|6030-6056|6068-6094
X: 7003-7028|7042-7066|7079-7105|7118-7143
Z: 7154-7180|7192-7216|7230-7256|7267-7292
Tilt angles:
a - Segment: 7304-7330 - Tilt: 7.0°
a - Segment: 7342-7367 - Tilt: 8.0°
a - Segment: 7380-7406 - Tilt: 3.7°
a - Segment: 7417-7443 - Tilt: 4.5°
S - Segment: 6854-6880 - Tilt: 4.2°
S - Segment: 6891-6916 - Tilt: 4.0°
S - Segment: 6930-6956 - Tilt: 1.2°
S - Segment: 6967-6992 - Tilt: 5.4°
R - Segment: 6104-6130 - Tilt: 8.6°
R - Segment: 6141-6165 - Tilt: 11.7°
R - Segment: 6181-6206 - Tilt: 5.6°
R - Segment: 6217-6242 - Tilt: 6.9°
U - Segment: 6255-6280 - Tilt: 8.6°
U - Segment: 6291-6315 - Tilt: 9.9°
U - Segment: 6331-6357 - Tilt: 6.3°
U - Segment: 6367-6392 - Tilt: 8.0°
T - Segment: 6555-6580 - Tilt: 8.1°
T - Segment: 6592-6616 - Tilt: 12.0°
T - Segment: 6631-6656 - Tilt: 5.2°
T - Segment: 6667-6692 - Tilt: 6.1°
W - Segment: 6703-6730 - Tilt: 11.4°
W - Segment: 6741-6766 - Tilt: 6.8°
W - Segment: 6779-6806 - Tilt: 10.5°
W - Segment: 6818-6842 - Tilt: 10.0°
V - Segment: 6405-6430 - Tilt: 5.7°
V - Segment: 6442-6466 - Tilt: 9.2°
V - Segment: 6481-6506 - Tilt: 4.4°
V - Segment: 6517-6542 - Tilt: 4.4°
Y - Segment: 5953-5978 - Tilt: 5.3°
Y - Segment: 5992-6017 - Tilt: 4.6°
Y - Segment: 6030-6056 - Tilt: 2.1°
Y - Segment: 6068-6094 - Tilt: 1.2°
X - Segment: 7003-7028 - Tilt: 7.3°
X - Segment: 7042-7066 - Tilt: 10.2°
X - Segment: 7079-7105 - Tilt: 3.1°
X - Segment: 7118-7143 - Tilt: 6.1°
Z - Segment: 7154-7180 - Tilt: 4.8°
Z - Segment: 7192-7216 - Tilt: 10.3°
Z - Segment: 7230-7256 - Tilt: 6.9°
Z - Segment: 7267-7292 - Tilt: 9.3°
Structural assessment:
MAIDEN score = -550.6129
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]