Yeast V-ATPase state 2
Organism: Saccharomyces cerevisiae
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00137
PDB ID: 3J9U
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 40.0 Å
Number of TM segments = 40
Sequence positions:
a: 14-40|51-75|91-116|126-151
S: 14-40|51-75|90-116|126-151
R: 14-40|51-75|91-116|127-151
U: 14-40|50-75|91-116|126-150
T: 14-40|50-75|91-116|126-151
W: 15-40|50-75|91-116|126-151
V: 15-40|50-73|91-116|125-150
Y: 15-40|50-75|91-116|126-151
X: 15-40|50-73|91-116|126-150
Z: 15-40|51-75|90-116|127-152
Tilt angles:
a - Segment: 14-40 - Tilt: 6.6°
a - Segment: 51-75 - Tilt: 12.5°
a - Segment: 91-116 - Tilt: 8.2°
a - Segment: 126-151 - Tilt: 6.0°
S - Segment: 14-40 - Tilt: 3.4°
S - Segment: 51-75 - Tilt: 10.9°
S - Segment: 90-116 - Tilt: 4.3°
S - Segment: 126-151 - Tilt: 7.1°
R - Segment: 14-40 - Tilt: 3.1°
R - Segment: 51-75 - Tilt: 8.6°
R - Segment: 91-116 - Tilt: 6.2°
R - Segment: 127-151 - Tilt: 8.2°
U - Segment: 14-40 - Tilt: 5.5°
U - Segment: 50-75 - Tilt: 7.1°
U - Segment: 91-116 - Tilt: 9.3°
U - Segment: 126-150 - Tilt: 8.6°
T - Segment: 14-40 - Tilt: 6.2°
T - Segment: 50-75 - Tilt: 9.1°
T - Segment: 91-116 - Tilt: 8.7°
T - Segment: 126-151 - Tilt: 8.8°
W - Segment: 15-40 - Tilt: 12.4°
W - Segment: 50-75 - Tilt: 7.0°
W - Segment: 91-116 - Tilt: 8.1°
W - Segment: 126-151 - Tilt: 6.1°
V - Segment: 15-40 - Tilt: 12.1°
V - Segment: 50-73 - Tilt: 5.1°
V - Segment: 91-116 - Tilt: 9.7°
V - Segment: 125-150 - Tilt: 7.9°
Y - Segment: 15-40 - Tilt: 11.9°
Y - Segment: 50-75 - Tilt: 7.0°
Y - Segment: 91-116 - Tilt: 7.7°
Y - Segment: 126-151 - Tilt: 5.3°
X - Segment: 15-40 - Tilt: 14.3°
X - Segment: 50-73 - Tilt: 6.6°
X - Segment: 91-116 - Tilt: 10.4°
X - Segment: 126-150 - Tilt: 9.6°
Z - Segment: 15-40 - Tilt: 11.3°
Z - Segment: 51-75 - Tilt: 10.3°
Z - Segment: 90-116 - Tilt: 2.0°
Z - Segment: 127-152 - Tilt: 4.5°
Structural assessment:
MAIDEN score = -489.8085
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]