Yeast V-ATPase state 2
Organism: Saccharomyces cerevisiae
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00137
PDB ID: 3J9U
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 40.0 Å
Number of TM segments = 40
Sequence positions:
a: 6254-6280|6292-6316|6331-6356|6368-6392
S: 6703-6730|6742-6766|6780-6806|6817-6842
R: 6404-6430|6443-6466|6480-6505|6518-6542
U: 5954-5980|5991-6016|6031-6056|6067-6092
T: 7003-7030|7041-7066|7081-7106|7117-7142
W: 7305-7330|7341-7366|7381-7406|7417-7442
V: 7155-7181|7191-7216|7231-7257|7267-7291
Y: 6854-6880|6891-6916|6931-6956|6968-6992
X: 6105-6130|6141-6164|6181-6206|6217-6242
Z: 6554-6580|6592-6616|6630-6656|6668-6693
Tilt angles:
a - Segment: 6254-6280 - Tilt: 6.5°
a - Segment: 6292-6316 - Tilt: 11.8°
a - Segment: 6331-6356 - Tilt: 3.8°
a - Segment: 6368-6392 - Tilt: 8.9°
S - Segment: 6703-6730 - Tilt: 9.2°
S - Segment: 6742-6766 - Tilt: 10.0°
S - Segment: 6780-6806 - Tilt: 5.6°
S - Segment: 6817-6842 - Tilt: 7.0°
R - Segment: 6404-6430 - Tilt: 3.8°
R - Segment: 6443-6466 - Tilt: 9.0°
R - Segment: 6480-6505 - Tilt: 2.0°
R - Segment: 6518-6542 - Tilt: 7.5°
U - Segment: 5954-5980 - Tilt: 6.4°
U - Segment: 5991-6016 - Tilt: 7.2°
U - Segment: 6031-6056 - Tilt: 5.9°
U - Segment: 6067-6092 - Tilt: 5.6°
T - Segment: 7003-7030 - Tilt: 10.4°
T - Segment: 7041-7066 - Tilt: 9.0°
T - Segment: 7081-7106 - Tilt: 5.9°
T - Segment: 7117-7142 - Tilt: 8.6°
W - Segment: 7305-7330 - Tilt: 8.0°
W - Segment: 7341-7366 - Tilt: 6.9°
W - Segment: 7381-7406 - Tilt: 4.1°
W - Segment: 7417-7442 - Tilt: 5.9°
V - Segment: 7155-7181 - Tilt: 7.2°
V - Segment: 7191-7216 - Tilt: 9.2°
V - Segment: 7231-7257 - Tilt: 5.2°
V - Segment: 7267-7291 - Tilt: 7.0°
Y - Segment: 6854-6880 - Tilt: 7.4°
Y - Segment: 6891-6916 - Tilt: 6.6°
Y - Segment: 6931-6956 - Tilt: 2.6°
Y - Segment: 6968-6992 - Tilt: 9.0°
X - Segment: 6105-6130 - Tilt: 10.6°
X - Segment: 6141-6164 - Tilt: 7.5°
X - Segment: 6181-6206 - Tilt: 5.6°
X - Segment: 6217-6242 - Tilt: 7.3°
Z - Segment: 6554-6580 - Tilt: 6.4°
Z - Segment: 6592-6616 - Tilt: 9.4°
Z - Segment: 6630-6656 - Tilt: 2.4°
Z - Segment: 6668-6693 - Tilt: 4.9°
Structural assessment:
MAIDEN score = -513.1875
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]