Yeast V-ATPase state 3
Organism: Saccharomyces cerevisiae
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00137
PDB ID: 3J9V
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 40.0 Å
Number of TM segments = 40
Sequence positions:
a: 14-40|50-75|91-116|126-151
S: 14-39|50-75|90-116|126-151
R: 14-40|50-75|90-116|126-151
U: 14-40|50-74|90-116|126-151
T: 14-40|51-76|90-116|126-152
W: 15-40|50-75|91-116|126-151
V: 14-40|50-75|91-116|126-151
Y: 14-40|50-75|91-116|126-150
X: 15-40|50-75|91-116|126-151
Z: 14-40|50-75|91-116|126-151
Tilt angles:
a - Segment: 14-40 - Tilt: 6.0°
a - Segment: 50-75 - Tilt: 8.2°
a - Segment: 91-116 - Tilt: 9.4°
a - Segment: 126-151 - Tilt: 7.4°
S - Segment: 14-39 - Tilt: 6.1°
S - Segment: 50-75 - Tilt: 7.7°
S - Segment: 90-116 - Tilt: 5.9°
S - Segment: 126-151 - Tilt: 8.3°
R - Segment: 14-40 - Tilt: 5.0°
R - Segment: 50-75 - Tilt: 7.9°
R - Segment: 90-116 - Tilt: 4.8°
R - Segment: 126-151 - Tilt: 7.0°
U - Segment: 14-40 - Tilt: 8.3°
U - Segment: 50-74 - Tilt: 11.5°
U - Segment: 90-116 - Tilt: 5.7°
U - Segment: 126-151 - Tilt: 8.4°
T - Segment: 14-40 - Tilt: 5.1°
T - Segment: 51-76 - Tilt: 6.0°
T - Segment: 90-116 - Tilt: 2.4°
T - Segment: 126-152 - Tilt: 2.8°
W - Segment: 15-40 - Tilt: 13.5°
W - Segment: 50-75 - Tilt: 9.8°
W - Segment: 91-116 - Tilt: 8.5°
W - Segment: 126-151 - Tilt: 5.9°
V - Segment: 14-40 - Tilt: 7.3°
V - Segment: 50-75 - Tilt: 6.7°
V - Segment: 91-116 - Tilt: 8.0°
V - Segment: 126-151 - Tilt: 8.2°
Y - Segment: 14-40 - Tilt: 4.8°
Y - Segment: 50-75 - Tilt: 5.4°
Y - Segment: 91-116 - Tilt: 7.9°
Y - Segment: 126-150 - Tilt: 7.2°
X - Segment: 15-40 - Tilt: 12.9°
X - Segment: 50-75 - Tilt: 9.8°
X - Segment: 91-116 - Tilt: 8.9°
X - Segment: 126-151 - Tilt: 6.2°
Z - Segment: 14-40 - Tilt: 5.1°
Z - Segment: 50-75 - Tilt: 6.8°
Z - Segment: 91-116 - Tilt: 10.2°
Z - Segment: 126-151 - Tilt: 6.1°
Structural assessment:
MAIDEN score = -533.7076
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]