Yeast V-ATPase state 3
Organism: Saccharomyces cerevisiae
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00137
PDB ID: 3J9V
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 40.0 Å
Number of TM segments = 40
Sequence positions:
a: 7004-7030|7041-7066|7081-7106|7117-7141
S: 7155-7180|7191-7214|7231-7257|7266-7290
R: 5954-5980|5991-6016|6031-6057|6067-6091
U: 6105-6131|6141-6164|6181-6207|6217-6241
T: 7305-7331|7341-7366|7381-7407|7417-7441
W: 6555-6581|6591-6616|6631-6656|6667-6692
V: 6855-6881|6891-6915|6931-6957|6967-6991
Y: 6404-6430|6442-6466|6481-6506|6518-6542
X: 6255-6280|6292-6316|6331-6356|6367-6392
Z: 6704-6730|6742-6766|6781-6806|6817-6842
Tilt angles:
a - Segment: 7004-7030 - Tilt: 6.0°
a - Segment: 7041-7066 - Tilt: 7.9°
a - Segment: 7081-7106 - Tilt: 6.4°
a - Segment: 7117-7141 - Tilt: 8.0°
S - Segment: 7155-7180 - Tilt: 8.3°
S - Segment: 7191-7214 - Tilt: 6.7°
S - Segment: 7231-7257 - Tilt: 8.3°
S - Segment: 7266-7290 - Tilt: 6.2°
R - Segment: 5954-5980 - Tilt: 6.4°
R - Segment: 5991-6016 - Tilt: 9.0°
R - Segment: 6031-6057 - Tilt: 6.2°
R - Segment: 6067-6091 - Tilt: 9.2°
U - Segment: 6105-6131 - Tilt: 10.7°
U - Segment: 6141-6164 - Tilt: 9.2°
U - Segment: 6181-6207 - Tilt: 8.3°
U - Segment: 6217-6241 - Tilt: 10.6°
T - Segment: 7305-7331 - Tilt: 6.8°
T - Segment: 7341-7366 - Tilt: 8.0°
T - Segment: 7381-7407 - Tilt: 4.8°
T - Segment: 7417-7441 - Tilt: 6.5°
W - Segment: 6555-6581 - Tilt: 9.4°
W - Segment: 6591-6616 - Tilt: 8.6°
W - Segment: 6631-6656 - Tilt: 2.7°
W - Segment: 6667-6692 - Tilt: 3.5°
V - Segment: 6855-6881 - Tilt: 9.2°
V - Segment: 6891-6915 - Tilt: 8.9°
V - Segment: 6931-6957 - Tilt: 4.6°
V - Segment: 6967-6991 - Tilt: 7.2°
Y - Segment: 6404-6430 - Tilt: 4.0°
Y - Segment: 6442-6466 - Tilt: 7.3°
Y - Segment: 6481-6506 - Tilt: 2.2°
Y - Segment: 6518-6542 - Tilt: 6.2°
X - Segment: 6255-6280 - Tilt: 7.1°
X - Segment: 6292-6316 - Tilt: 11.3°
X - Segment: 6331-6356 - Tilt: 1.8°
X - Segment: 6367-6392 - Tilt: 3.4°
Z - Segment: 6704-6730 - Tilt: 4.7°
Z - Segment: 6742-6766 - Tilt: 9.4°
Z - Segment: 6781-6806 - Tilt: 5.5°
Z - Segment: 6817-6842 - Tilt: 5.8°
Structural assessment:
MAIDEN score = -577.2528
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]