Alpha-1 glycine receptor by single particle electron cryo-microscopy, strychnine-bound state
Organism: Danio rerio
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF02932
PDB ID: 3JAD
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 29.4 Å
Number of TM segments = 20
Sequence positions:
A: 240-259|267-286|299-319|341-360
C: 240-259|267-286|299-319|341-359
B: 240-259|267-286|299-319|341-360
E: 240-259|267-286|300-319|341-359
D: 240-259|267-286|300-319|341-359
Tilt angles:
A - Segment: 240-259 - Tilt: 11.0°
A - Segment: 267-286 - Tilt: 5.5°
A - Segment: 299-319 - Tilt: 20.7°
A - Segment: 341-360 - Tilt: 9.9°
C - Segment: 240-259 - Tilt: 11.9°
C - Segment: 267-286 - Tilt: 5.3°
C - Segment: 299-319 - Tilt: 21.6°
C - Segment: 341-359 - Tilt: 17.6°
B - Segment: 240-259 - Tilt: 11.5°
B - Segment: 267-286 - Tilt: 5.7°
B - Segment: 299-319 - Tilt: 21.2°
B - Segment: 341-360 - Tilt: 10.5°
E - Segment: 240-259 - Tilt: 11.0°
E - Segment: 267-286 - Tilt: 4.8°
E - Segment: 300-319 - Tilt: 15.3°
E - Segment: 341-359 - Tilt: 16.5°
D - Segment: 240-259 - Tilt: 11.7°
D - Segment: 267-286 - Tilt: 4.7°
D - Segment: 300-319 - Tilt: 15.9°
D - Segment: 341-359 - Tilt: 17.0°
Structural assessment:
MAIDEN score = -281.7110
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]