Alpha-1 glycine receptor by single particle electron cryo-microscopy, glycine-bound state
Organism: Danio rerio
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF02932
PDB ID: 3JAE
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 30.3 Å
Number of TM segments = 20
Sequence positions:
A: 240-260|266-285|299-319|341-359
C: 240-260|266-285|299-319|341-360
B: 240-260|266-285|299-319|341-359
E: 240-260|266-285|299-319|341-359
D: 240-260|266-285|299-319|341-359
Tilt angles:
A - Segment: 240-260 - Tilt: 8.6°
A - Segment: 266-285 - Tilt: 5.6°
A - Segment: 299-319 - Tilt: 14.9°
A - Segment: 341-359 - Tilt: 13.0°
C - Segment: 240-260 - Tilt: 9.9°
C - Segment: 266-285 - Tilt: 6.2°
C - Segment: 299-319 - Tilt: 16.0°
C - Segment: 341-360 - Tilt: 9.8°
B - Segment: 240-260 - Tilt: 9.4°
B - Segment: 266-285 - Tilt: 6.3°
B - Segment: 299-319 - Tilt: 15.2°
B - Segment: 341-359 - Tilt: 13.8°
E - Segment: 240-260 - Tilt: 8.8°
E - Segment: 266-285 - Tilt: 5.1°
E - Segment: 299-319 - Tilt: 15.5°
E - Segment: 341-359 - Tilt: 13.1°
D - Segment: 240-260 - Tilt: 9.6°
D - Segment: 266-285 - Tilt: 5.5°
D - Segment: 299-319 - Tilt: 16.1°
D - Segment: 341-359 - Tilt: 13.9°
Structural assessment:
MAIDEN score = -287.9482
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]