Alpha-1 glycine receptor by single particle electron cryo-microscopy, glycine/ivermectin-bound state
Organism: Danio rerio
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF02932
PDB ID: 3JAF
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 38.0 Å
Number of TM segments = 20
Sequence positions:
A: 236-260|265-289|294-319|339-365
C: 236-260|265-289|294-319|339-365
B: 236-260|265-289|294-319|339-365
E: 236-260|265-289|294-319|341-365
D: 236-260|265-289|294-319|341-365
Tilt angles:
A - Segment: 236-260 - Tilt: 16.7°
A - Segment: 265-289 - Tilt: 5.4°
A - Segment: 294-319 - Tilt: 5.8°
A - Segment: 339-365 - Tilt: 19.4°
C - Segment: 236-260 - Tilt: 17.0°
C - Segment: 265-289 - Tilt: 5.5°
C - Segment: 294-319 - Tilt: 7.5°
C - Segment: 339-365 - Tilt: 20.1°
B - Segment: 236-260 - Tilt: 16.2°
B - Segment: 265-289 - Tilt: 4.7°
B - Segment: 294-319 - Tilt: 6.9°
B - Segment: 339-365 - Tilt: 19.1°
E - Segment: 236-260 - Tilt: 17.8°
E - Segment: 265-289 - Tilt: 6.4°
E - Segment: 294-319 - Tilt: 5.8°
E - Segment: 341-365 - Tilt: 13.2°
D - Segment: 236-260 - Tilt: 17.9°
D - Segment: 265-289 - Tilt: 6.4°
D - Segment: 294-319 - Tilt: 6.9°
D - Segment: 341-365 - Tilt: 13.6°
Structural assessment:
MAIDEN score = -321.9725
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]