Mammalian Sec61 channel opened by a signal sequence
Organism: Canis lupus familiaris
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3JC2
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 13
Sequence positions:
1: 30-45|79-94|115-127|156-170|176-188|245-259|287-301|361-376|424-438|442-455
3: 28-41
2: 36-50
w: 13-29
Tilt angles:
1 - Segment: 30-45 - Tilt: 30.8°
1 - Segment: 79-94 - Tilt: 39.2°
1 - Segment: 115-127 - Tilt: 17.8°
1 - Segment: 156-170 - Tilt: 32.8°
1 - Segment: 176-188 - Tilt: 36.4°
1 - Segment: 245-259 - Tilt: 21.4°
1 - Segment: 287-301 - Tilt: 44.5°
1 - Segment: 361-376 - Tilt: 41.2°
1 - Segment: 424-438 - Tilt: 30.2°
1 - Segment: 442-455 - Tilt: 24.2°
3 - Segment: 28-41 - Tilt: 25.0°
2 - Segment: 36-50 - Tilt: 42.2°
w - Segment: 13-29 - Tilt: 49.5°
Structural assessment:
MAIDEN score = -69.3633
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]