Mammalian Sec61 channel opened by a signal sequence
Organism: Canis lupus familiaris
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3JC2
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.0 Å
Number of TM segments = 11
Sequence positions:
1: 22-36|46-61|86-101|108-127|135-150|204-218|243-261|297-314|357-371|375-390
2: 428-446
Tilt angles:
1 - Segment: 22-36 - Tilt: 31.0°
1 - Segment: 46-61 - Tilt: 43.0°
1 - Segment: 86-101 - Tilt: 2.6°
1 - Segment: 108-127 - Tilt: 40.5°
1 - Segment: 135-150 - Tilt: 32.4°
1 - Segment: 204-218 - Tilt: 15.4°
1 - Segment: 243-261 - Tilt: 42.0°
1 - Segment: 297-314 - Tilt: 39.4°
1 - Segment: 357-371 - Tilt: 23.5°
1 - Segment: 375-390 - Tilt: 25.9°
2 - Segment: 428-446 - Tilt: 49.0°
Structural assessment:
MAIDEN score = -59.3982
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]