Outer membrane complex of a type IV secretion system
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF03743
PDB ID: 3JQO
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 106
Sequence positions:
A: 75-89|91-98|114-127|163-180
C: 342-349
B: 213-220|228-272|275-293|299-310
E: 564-571|579-623|626-644|648-661
D: 465-478|513-531
G: 815-829|861-879
F: 691-699
I: 1039-1047
H: 912-919|927-971|974-992|996-1009
K: 1264-1271|1279-1323|1326-1344|1346-1361
J: 1163-1177|1213-1230
M: 1518-1532|1568-1585
L: 1394-1402
O: 1745-1752
N: 1619-1626|1634-1676
Q: 1970-1977|1984-2027
P: 1869-1883|1919-1936
S: 2220-2233|2270-2288
R: 2097-2104
U: 2450-2458
T: 2321-2328|2336-2380|2383-2401|2403-2418
W: 2674-2681|2689-2733|2736-2754|2758-2771
V: 2574-2587|2623-2641
Y: 2924-2937|2973-2990
X: 2800-2808
Z: 3023-3030|3038-3082|3085-3103|3109-3120
a: 3149-3157
c: 3372-3379|3387-3431|3434-3452|3458-3469
b: 3234-3248|3250-3257|3273-3286|3322-3339
e: 3583-3597|3599-3606|3622-3635|3672-3689
d: 3499-3506
g: 3850-3857
f: 3722-3729|3737-3781|3784-3802|3808-3819
i: 4072-4079|4087-4131|4134-4152|4158-4169
h: 3934-3948|3950-3957|3973-3986|4022-4039
k: 4284-4298|4300-4307|4323-4336|4373-4390
j: 4200-4207
m: 4551-4558
l: 4421-4430|4438-4482|4485-4503|4509-4520
o: 4772-4781|4789-4833|4836-4854|4860-4871
n: 4638-4652|4654-4661|4677-4690|4724-4741
p: 4901-4908
Tilt angles:
A - Segment: 75-89 - Tilt: 58.6°
A - Segment: 91-98 - Tilt: 27.7°
A - Segment: 114-127 - Tilt: 12.7°
A - Segment: 163-180 - Tilt: 57.3°
C - Segment: 342-349 - Tilt: 10.4°
B - Segment: 213-220 - Tilt: 27.1°
B - Segment: 228-272 - Tilt: 18.4°
B - Segment: 275-293 - Tilt: 39.9°
B - Segment: 299-310 - Tilt: 41.1°
E - Segment: 564-571 - Tilt: 26.9°
E - Segment: 579-623 - Tilt: 18.6°
E - Segment: 626-644 - Tilt: 39.8°
E - Segment: 648-661 - Tilt: 49.2°
D - Segment: 465-478 - Tilt: 12.7°
D - Segment: 513-531 - Tilt: 53.6°
G - Segment: 815-829 - Tilt: 19.1°
G - Segment: 861-879 - Tilt: 53.4°
F - Segment: 691-699 - Tilt: 6.2°
I - Segment: 1039-1047 - Tilt: 6.1°
H - Segment: 912-919 - Tilt: 26.9°
H - Segment: 927-971 - Tilt: 18.8°
H - Segment: 974-992 - Tilt: 39.5°
H - Segment: 996-1009 - Tilt: 49.1°
K - Segment: 1264-1271 - Tilt: 26.5°
K - Segment: 1279-1323 - Tilt: 18.3°
K - Segment: 1326-1344 - Tilt: 39.3°
K - Segment: 1346-1361 - Tilt: 55.8°
J - Segment: 1163-1177 - Tilt: 18.9°
J - Segment: 1213-1230 - Tilt: 56.0°
M - Segment: 1518-1532 - Tilt: 18.5°
M - Segment: 1568-1585 - Tilt: 55.7°
L - Segment: 1394-1402 - Tilt: 5.9°
O - Segment: 1745-1752 - Tilt: 8.9°
N - Segment: 1619-1626 - Tilt: 26.6°
N - Segment: 1634-1676 - Tilt: 32.3°
Q - Segment: 1970-1977 - Tilt: 27.2°
Q - Segment: 1984-2027 - Tilt: 25.7°
P - Segment: 1869-1883 - Tilt: 18.2°
P - Segment: 1919-1936 - Tilt: 55.8°
S - Segment: 2220-2233 - Tilt: 11.6°
S - Segment: 2270-2288 - Tilt: 52.9°
R - Segment: 2097-2104 - Tilt: 8.5°
U - Segment: 2450-2458 - Tilt: 6.8°
T - Segment: 2321-2328 - Tilt: 28.1°
T - Segment: 2336-2380 - Tilt: 20.1°
T - Segment: 2383-2401 - Tilt: 39.2°
T - Segment: 2403-2418 - Tilt: 57.4°
W - Segment: 2674-2681 - Tilt: 27.8°
W - Segment: 2689-2733 - Tilt: 19.4°
W - Segment: 2736-2754 - Tilt: 39.6°
W - Segment: 2758-2771 - Tilt: 50.1°
V - Segment: 2574-2587 - Tilt: 11.8°
V - Segment: 2623-2641 - Tilt: 53.4°
Y - Segment: 2924-2937 - Tilt: 11.9°
Y - Segment: 2973-2990 - Tilt: 57.0°
X - Segment: 2800-2808 - Tilt: 6.3°
Z - Segment: 3023-3030 - Tilt: 27.6°
Z - Segment: 3038-3082 - Tilt: 19.7°
Z - Segment: 3085-3103 - Tilt: 39.7°
Z - Segment: 3109-3120 - Tilt: 42.3°
a - Segment: 3149-3157 - Tilt: 6.4°
c - Segment: 3372-3379 - Tilt: 27.6°
c - Segment: 3387-3431 - Tilt: 19.2°
c - Segment: 3434-3452 - Tilt: 39.7°
c - Segment: 3458-3469 - Tilt: 42.1°
b - Segment: 3234-3248 - Tilt: 58.8°
b - Segment: 3250-3257 - Tilt: 27.9°
b - Segment: 3273-3286 - Tilt: 12.1°
b - Segment: 3322-3339 - Tilt: 56.9°
e - Segment: 3583-3597 - Tilt: 58.7°
e - Segment: 3599-3606 - Tilt: 27.9°
e - Segment: 3622-3635 - Tilt: 11.9°
e - Segment: 3672-3689 - Tilt: 56.8°
d - Segment: 3499-3506 - Tilt: 10.9°
g - Segment: 3850-3857 - Tilt: 11.1°
f - Segment: 3722-3729 - Tilt: 27.6°
f - Segment: 3737-3781 - Tilt: 19.2°
f - Segment: 3784-3802 - Tilt: 39.7°
f - Segment: 3808-3819 - Tilt: 42.1°
i - Segment: 4072-4079 - Tilt: 27.3°
i - Segment: 4087-4131 - Tilt: 19.3°
i - Segment: 4134-4152 - Tilt: 39.8°
i - Segment: 4158-4169 - Tilt: 41.9°
h - Segment: 3934-3948 - Tilt: 58.8°
h - Segment: 3950-3957 - Tilt: 27.8°
h - Segment: 3973-3986 - Tilt: 12.0°
h - Segment: 4022-4039 - Tilt: 56.9°
k - Segment: 4284-4298 - Tilt: 58.8°
k - Segment: 4300-4307 - Tilt: 28.0°
k - Segment: 4323-4336 - Tilt: 12.2°
k - Segment: 4373-4390 - Tilt: 56.9°
j - Segment: 4200-4207 - Tilt: 10.8°
m - Segment: 4551-4558 - Tilt: 10.7°
l - Segment: 4421-4430 - Tilt: 11.9°
l - Segment: 4438-4482 - Tilt: 19.2°
l - Segment: 4485-4503 - Tilt: 39.6°
l - Segment: 4509-4520 - Tilt: 42.0°
o - Segment: 4772-4781 - Tilt: 12.4°
o - Segment: 4789-4833 - Tilt: 19.7°
o - Segment: 4836-4854 - Tilt: 39.7°
o - Segment: 4860-4871 - Tilt: 42.3°
n - Segment: 4638-4652 - Tilt: 58.9°
n - Segment: 4654-4661 - Tilt: 28.0°
n - Segment: 4677-4690 - Tilt: 12.4°
n - Segment: 4724-4741 - Tilt: 57.3°
p - Segment: 4901-4908 - Tilt: 11.8°
Structural assessment:
MAIDEN score = 2740.6119
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]