Pentameric formate channel
Organism: Vibrio cholerae
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01226
PDB ID: 3KLY
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 29.0 Å
Number of TM segments = 30
Sequence positions:
A: 33-54|67-96|109-136|158-181|187-219|246-272
C: 33-55|67-94|110-136|158-181|187-221|246-272
B: 33-54|67-93|110-136|158-181|187-219|246-271
E: 33-54|67-92|110-134|160-181|187-218|249-272
D: 33-54|67-92|109-136|159-181|187-218|249-272
Tilt angles:
A - Segment: 33-54 - Tilt: 36.5°
A - Segment: 67-96 - Tilt: 37.0°
A - Segment: 109-136 - Tilt: 43.5°
A - Segment: 158-181 - Tilt: 34.4°
A - Segment: 187-219 - Tilt: 37.9°
A - Segment: 246-272 - Tilt: 44.1°
C - Segment: 33-55 - Tilt: 31.6°
C - Segment: 67-94 - Tilt: 31.8°
C - Segment: 110-136 - Tilt: 47.6°
C - Segment: 158-181 - Tilt: 33.9°
C - Segment: 187-221 - Tilt: 43.9°
C - Segment: 246-272 - Tilt: 45.1°
B - Segment: 33-54 - Tilt: 36.2°
B - Segment: 67-93 - Tilt: 31.4°
B - Segment: 110-136 - Tilt: 47.5°
B - Segment: 158-181 - Tilt: 34.4°
B - Segment: 187-219 - Tilt: 37.1°
B - Segment: 246-271 - Tilt: 47.8°
E - Segment: 33-54 - Tilt: 37.1°
E - Segment: 67-92 - Tilt: 28.3°
E - Segment: 110-134 - Tilt: 51.8°
E - Segment: 160-181 - Tilt: 44.7°
E - Segment: 187-218 - Tilt: 41.5°
E - Segment: 249-272 - Tilt: 38.3°
D - Segment: 33-54 - Tilt: 37.1°
D - Segment: 67-92 - Tilt: 29.3°
D - Segment: 109-136 - Tilt: 44.0°
D - Segment: 159-181 - Tilt: 38.4°
D - Segment: 187-218 - Tilt: 41.4°
D - Segment: 249-272 - Tilt: 39.1°
Structural assessment:
MAIDEN score = -292.3303
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]