Aquaporin structure from plant pathogen Agrobacterium Tumerfaciens
Organism: Agrobacterium tumefaciens
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00230
PDB ID: 3LLQ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 29.4 Å
Number of TM segments = 9
Sequence positions:
A: 36-73|78-99|129-151|158-176|200-225
B: 234-255|366-386|390-409|437-459
Tilt angles:
A - Segment: 36-73 - Tilt: 29.3°
A - Segment: 78-99 - Tilt: 35.5°
A - Segment: 129-151 - Tilt: 32.2°
A - Segment: 158-176 - Tilt: 26.5°
A - Segment: 200-225 - Tilt: 40.1°
B - Segment: 234-255 - Tilt: 25.8°
B - Segment: 366-386 - Tilt: 20.8°
B - Segment: 390-409 - Tilt: 17.4°
B - Segment: 437-459 - Tilt: 34.3°
Structural assessment:
MAIDEN score = -95.0607
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]