CBB3 cytochrome oxidase
Organism: Pseudomonas stutzeri
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00115
PDB ID: 3MK7
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.2 Å
Number of TM segments = 15
Sequence positions:
A: 12-33|54-70|89-107|125-141|158-172|200-215|237-251|268-283|308-324|337-354|381-397|429-446
C: 674-688|720-734
B: 473-488
Tilt angles:
A - Segment: 12-33 - Tilt: 44.9°
A - Segment: 54-70 - Tilt: 24.2°
A - Segment: 89-107 - Tilt: 35.8°
A - Segment: 125-141 - Tilt: 25.6°
A - Segment: 158-172 - Tilt: 26.0°
A - Segment: 200-215 - Tilt: 14.9°
A - Segment: 237-251 - Tilt: 17.9°
A - Segment: 268-283 - Tilt: 21.5°
A - Segment: 308-324 - Tilt: 32.7°
A - Segment: 337-354 - Tilt: 32.7°
A - Segment: 381-397 - Tilt: 26.7°
A - Segment: 429-446 - Tilt: 34.4°
C - Segment: 674-688 - Tilt: 21.0°
C - Segment: 720-734 - Tilt: 21.8°
B - Segment: 473-488 - Tilt: 23.2°
Structural assessment:
MAIDEN score = -57.9599
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]