Lateral opening of a translocon upon entry of protein suggests the mechanism of insertion into membranes
Organism: Pyrococcus furiosus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3MP7
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.1 Å
Number of TM segments = 11
Sequence positions:
A: 30-46|72-87|116-131|148-168|175-191|244-259|285-306|348-363|411-427|429-444
B: 26-52
Tilt angles:
A - Segment: 30-46 - Tilt: 34.6°
A - Segment: 72-87 - Tilt: 40.2°
A - Segment: 116-131 - Tilt: 21.1°
A - Segment: 148-168 - Tilt: 47.2°
A - Segment: 175-191 - Tilt: 23.0°
A - Segment: 244-259 - Tilt: 11.7°
A - Segment: 285-306 - Tilt: 56.8°
A - Segment: 348-363 - Tilt: 16.3°
A - Segment: 411-427 - Tilt: 25.1°
A - Segment: 429-444 - Tilt: 20.6°
B - Segment: 26-52 - Tilt: 56.2°
Structural assessment:
MAIDEN score = -72.4612
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]