Lateral opening of a translocon upon entry of protein suggests the mechanism of insertion into membranes
Organism: Pyrococcus furiosus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 3MP7
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.2 Å
Number of TM segments = 9
Sequence positions:
A: 4-18|101-115|117-133|188-203|212-227|283-298|325-341|348-363
B: 409-428
Tilt angles:
A - Segment: 4-18 - Tilt: 17.6°
A - Segment: 101-115 - Tilt: 28.6°
A - Segment: 117-133 - Tilt: 35.8°
A - Segment: 188-203 - Tilt: 24.0°
A - Segment: 212-227 - Tilt: 34.8°
A - Segment: 283-298 - Tilt: 27.7°
A - Segment: 325-341 - Tilt: 31.9°
A - Segment: 348-363 - Tilt: 15.9°
B - Segment: 409-428 - Tilt: 45.9°
Structural assessment:
MAIDEN score = -47.4595
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]