Designed ankyrin repeat protein (DARPIN) Binders to AcrB: Plasticity of the Interface
Organism: Escherichia coli
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00873
PDB ID: 3NOG
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.1 Å
Number of TM segments = 32
Sequence positions:
A: 10-26|340-357|365-383|396-412|441-456|470-489|541-556|875-891|894-918|927-944|974-991|1003-1022
C: 9-25|398-414|439-455|471-492|538-553|930-947|971-987|1007-1026
B: 8-24|341-358|362-382|398-414|438-455|471-493|540-556|875-892|894-916|929-945|973-990|1003-1022
Tilt angles:
A - Segment: 10-26 - Tilt: 17.2°
A - Segment: 340-357 - Tilt: 14.0°
A - Segment: 365-383 - Tilt: 37.1°
A - Segment: 396-412 - Tilt: 14.7°
A - Segment: 441-456 - Tilt: 14.6°
A - Segment: 470-489 - Tilt: 31.0°
A - Segment: 541-556 - Tilt: 11.6°
A - Segment: 875-891 - Tilt: 22.6°
A - Segment: 894-918 - Tilt: 54.1°
A - Segment: 927-944 - Tilt: 22.0°
A - Segment: 974-991 - Tilt: 31.6°
A - Segment: 1003-1022 - Tilt: 30.1°
C - Segment: 9-25 - Tilt: 9.9°
C - Segment: 398-414 - Tilt: 15.2°
C - Segment: 439-455 - Tilt: 23.7°
C - Segment: 471-492 - Tilt: 35.4°
C - Segment: 538-553 - Tilt: 10.7°
C - Segment: 930-947 - Tilt: 14.4°
C - Segment: 971-987 - Tilt: 24.2°
C - Segment: 1007-1026 - Tilt: 35.8°
B - Segment: 8-24 - Tilt: 15.1°
B - Segment: 341-358 - Tilt: 19.7°
B - Segment: 362-382 - Tilt: 47.9°
B - Segment: 398-414 - Tilt: 12.0°
B - Segment: 438-455 - Tilt: 27.7°
B - Segment: 471-493 - Tilt: 36.2°
B - Segment: 540-556 - Tilt: 17.7°
B - Segment: 875-892 - Tilt: 18.5°
B - Segment: 894-916 - Tilt: 46.6°
B - Segment: 929-945 - Tilt: 1.0°
B - Segment: 973-990 - Tilt: 13.5°
B - Segment: 1003-1022 - Tilt: 24.7°
Structural assessment:
MAIDEN score = -322.4731
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]