Designed ankyrin repeat protein (DARPIN) Binders to AcrB: Plasticity of the Interface
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00873
PDB ID: 3NOG
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 26.1 Å
Number of TM segments = 32
Sequence positions:
A: 10-27|337-353|365-385|392-408|441-456|466-487|535-552|852-868|876-899|902-920|955-971|977-996
C: 2047-2063|2434-2451|2475-2492|2508-2527|2574-2589|2967-2984|3008-3024|3044-3067
B: 1018-1034|1350-1367|1372-1392|1406-1423|1449-1467|1480-1502|1552-1568|1881-1897|1905-1925|1934-1950|1981-1998|2008-2024
Tilt angles:
A - Segment: 10-27 - Tilt: 21.4°
A - Segment: 337-353 - Tilt: 12.8°
A - Segment: 365-385 - Tilt: 35.2°
A - Segment: 392-408 - Tilt: 10.5°
A - Segment: 441-456 - Tilt: 12.4°
A - Segment: 466-487 - Tilt: 36.6°
A - Segment: 535-552 - Tilt: 19.6°
A - Segment: 852-868 - Tilt: 29.9°
A - Segment: 876-899 - Tilt: 46.6°
A - Segment: 902-920 - Tilt: 18.4°
A - Segment: 955-971 - Tilt: 27.5°
A - Segment: 977-996 - Tilt: 27.9°
C - Segment: 2047-2063 - Tilt: 6.2°
C - Segment: 2434-2451 - Tilt: 17.1°
C - Segment: 2475-2492 - Tilt: 24.9°
C - Segment: 2508-2527 - Tilt: 25.0°
C - Segment: 2574-2589 - Tilt: 21.2°
C - Segment: 2967-2984 - Tilt: 11.9°
C - Segment: 3008-3024 - Tilt: 24.7°
C - Segment: 3044-3067 - Tilt: 42.4°
B - Segment: 1018-1034 - Tilt: 13.0°
B - Segment: 1350-1367 - Tilt: 22.8°
B - Segment: 1372-1392 - Tilt: 48.8°
B - Segment: 1406-1423 - Tilt: 17.9°
B - Segment: 1449-1467 - Tilt: 23.0°
B - Segment: 1480-1502 - Tilt: 41.1°
B - Segment: 1552-1568 - Tilt: 4.2°
B - Segment: 1881-1897 - Tilt: 27.8°
B - Segment: 1905-1925 - Tilt: 50.2°
B - Segment: 1934-1950 - Tilt: 18.3°
B - Segment: 1981-1998 - Tilt: 25.5°
B - Segment: 2008-2024 - Tilt: 13.2°
Structural assessment:
MAIDEN score = -293.2237
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]