OmpF, an Outer Membrane Protein from Salmonella typhi
Organism: Salmonella enterica
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF00267
PDB ID: 3NSG
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 42
Sequence positions:
A: 16-23|32-40|56-67|70-81|150-157|172-179|185-192|211-218|224-231|254-260|268-275|293-299|308-314|332-339
C: 698-707|713-722|738-749|752-764|832-839|854-860|867-874|893-899|907-913|936-941|951-957|974-980|990-997|1013-1020
B: 357-364|373-381|397-408|411-422|492-499|512-518|527-533|551-557|566-572|594-600|610-616|633-639|649-656|672-679
Tilt angles:
A - Segment: 16-23 - Tilt: 43.6°
A - Segment: 32-40 - Tilt: 45.8°
A - Segment: 56-67 - Tilt: 55.9°
A - Segment: 70-81 - Tilt: 56.2°
A - Segment: 150-157 - Tilt: 42.4°
A - Segment: 172-179 - Tilt: 44.1°
A - Segment: 185-192 - Tilt: 42.9°
A - Segment: 211-218 - Tilt: 40.0°
A - Segment: 224-231 - Tilt: 36.9°
A - Segment: 254-260 - Tilt: 34.5°
A - Segment: 268-275 - Tilt: 32.7°
A - Segment: 293-299 - Tilt: 29.9°
A - Segment: 308-314 - Tilt: 36.7°
A - Segment: 332-339 - Tilt: 39.8°
C - Segment: 698-707 - Tilt: 52.4°
C - Segment: 713-722 - Tilt: 50.1°
C - Segment: 738-749 - Tilt: 58.0°
C - Segment: 752-764 - Tilt: 56.3°
C - Segment: 832-839 - Tilt: 39.3°
C - Segment: 854-860 - Tilt: 37.9°
C - Segment: 867-874 - Tilt: 38.9°
C - Segment: 893-899 - Tilt: 34.4°
C - Segment: 907-913 - Tilt: 31.6°
C - Segment: 936-941 - Tilt: 35.2°
C - Segment: 951-957 - Tilt: 30.2°
C - Segment: 974-980 - Tilt: 29.8°
C - Segment: 990-997 - Tilt: 34.1°
C - Segment: 1013-1020 - Tilt: 37.2°
B - Segment: 357-364 - Tilt: 47.5°
B - Segment: 373-381 - Tilt: 47.4°
B - Segment: 397-408 - Tilt: 52.7°
B - Segment: 411-422 - Tilt: 52.8°
B - Segment: 492-499 - Tilt: 34.2°
B - Segment: 512-518 - Tilt: 39.1°
B - Segment: 527-533 - Tilt: 37.9°
B - Segment: 551-557 - Tilt: 37.7°
B - Segment: 566-572 - Tilt: 34.3°
B - Segment: 594-600 - Tilt: 34.5°
B - Segment: 610-616 - Tilt: 34.9°
B - Segment: 633-639 - Tilt: 33.8°
B - Segment: 649-656 - Tilt: 36.0°
B - Segment: 672-679 - Tilt: 37.9°
Structural assessment:
MAIDEN score = 1004.7791
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]