Bovine rhodopsin with beta-ionone
Organism: Bos taurus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00001
PDB ID: 3OAX
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 7
Sequence positions:
A: 35-52|75-99|112-133|151-168|209-225|257-270|289-302
Tilt angles:
A - Segment: 35-52 - Tilt: 57.3°
A - Segment: 75-99 - Tilt: 60.1°
A - Segment: 112-133 - Tilt: 56.0°
A - Segment: 151-168 - Tilt: 39.3°
A - Segment: 209-225 - Tilt: 26.0°
A - Segment: 257-270 - Tilt: 26.3°
A - Segment: 289-302 - Tilt: 36.1°
Structural assessment:
MAIDEN score = -74.3381
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]