CXCR4 chemokine receptor in complex with small molecule antagonist IT1t
Organism: Homo sapiens
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00001
PDB ID: 3ODU
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.4 Å
Number of TM segments = 14
Sequence positions:
A: 46-61|76-91|114-132|155-169|202-220|240-253|290-304
B: 47-62|76-90|114-132|154-168|202-220|240-253|290-304
Tilt angles:
A - Segment: 46-61 - Tilt: 20.5°
A - Segment: 76-91 - Tilt: 27.4°
A - Segment: 114-132 - Tilt: 38.6°
A - Segment: 155-169 - Tilt: 15.4°
A - Segment: 202-220 - Tilt: 38.4°
A - Segment: 240-253 - Tilt: 14.0°
A - Segment: 290-304 - Tilt: 24.3°
B - Segment: 47-62 - Tilt: 23.1°
B - Segment: 76-90 - Tilt: 26.2°
B - Segment: 114-132 - Tilt: 34.6°
B - Segment: 154-168 - Tilt: 2.6°
B - Segment: 202-220 - Tilt: 34.6°
B - Segment: 240-253 - Tilt: 18.1°
B - Segment: 290-304 - Tilt: 26.0°
Structural assessment:
MAIDEN score = -78.6054
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]