CXCR4 chemokine receptor in complex with small molecule antagonist IT1t
Organism: Homo sapiens
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00001
PDB ID: 3ODU
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 35.4 Å
Number of TM segments = 14
Sequence positions:
A: 10-35|50-73|75-105|129-150|168-194|378-402|418-441
B: 478-501|514-537|543-571|593-615|633-659|842-867|883-907
Tilt angles:
A - Segment: 10-35 - Tilt: 23.1°
A - Segment: 50-73 - Tilt: 22.9°
A - Segment: 75-105 - Tilt: 35.8°
A - Segment: 129-150 - Tilt: 18.3°
A - Segment: 168-194 - Tilt: 29.1°
A - Segment: 378-402 - Tilt: 22.3°
A - Segment: 418-441 - Tilt: 24.2°
B - Segment: 478-501 - Tilt: 20.0°
B - Segment: 514-537 - Tilt: 13.9°
B - Segment: 543-571 - Tilt: 36.2°
B - Segment: 593-615 - Tilt: 9.5°
B - Segment: 633-659 - Tilt: 24.2°
B - Segment: 842-867 - Tilt: 23.9°
B - Segment: 883-907 - Tilt: 29.1°
Structural assessment:
MAIDEN score = -125.5072
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]