Potassium Transporter TrkH from Vibrio parahaemolyticus
Organism: Vibrio parahaemolyticus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF02386
PDB ID: 3PJZ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.0 Å
Number of TM segments = 20
Sequence positions:
A: 10-27|38-55|73-88|129-143|186-203|236-252|278-293|334-358|402-420|455-475
B: 9-27|39-56|72-87|129-145|185-203|237-253|278-293|334-358|402-420|455-475
Tilt angles:
A - Segment: 10-27 - Tilt: 43.5°
A - Segment: 38-55 - Tilt: 23.1°
A - Segment: 73-88 - Tilt: 19.2°
A - Segment: 129-143 - Tilt: 26.0°
A - Segment: 186-203 - Tilt: 35.7°
A - Segment: 236-252 - Tilt: 28.0°
A - Segment: 278-293 - Tilt: 22.0°
A - Segment: 334-358 - Tilt: 28.3°
A - Segment: 402-420 - Tilt: 28.1°
A - Segment: 455-475 - Tilt: 12.0°
B - Segment: 9-27 - Tilt: 36.4°
B - Segment: 39-56 - Tilt: 36.3°
B - Segment: 72-87 - Tilt: 22.9°
B - Segment: 129-145 - Tilt: 24.9°
B - Segment: 185-203 - Tilt: 31.8°
B - Segment: 237-253 - Tilt: 30.4°
B - Segment: 278-293 - Tilt: 23.4°
B - Segment: 334-358 - Tilt: 29.7°
B - Segment: 402-420 - Tilt: 27.4°
B - Segment: 455-475 - Tilt: 10.8°
Structural assessment:
MAIDEN score = -157.9205
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]