Potassium Transporter TrkH from Vibrio parahaemolyticus
Organism: Vibrio parahaemolyticus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02386
PDB ID: 3PJZ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.0 Å
Number of TM segments = 20
Sequence positions:
A: 9-27|38-54|72-87|128-143|169-187|220-236|260-277|318-342|386-403|439-459
B: 475-494|506-523|539-555|597-611|637-655|688-704|728-745|786-810|854-871|907-927
Tilt angles:
A - Segment: 9-27 - Tilt: 36.6°
A - Segment: 38-54 - Tilt: 20.0°
A - Segment: 72-87 - Tilt: 23.5°
A - Segment: 128-143 - Tilt: 18.9°
A - Segment: 169-187 - Tilt: 30.2°
A - Segment: 220-236 - Tilt: 27.0°
A - Segment: 260-277 - Tilt: 28.6°
A - Segment: 318-342 - Tilt: 24.9°
A - Segment: 386-403 - Tilt: 29.9°
A - Segment: 439-459 - Tilt: 8.4°
B - Segment: 475-494 - Tilt: 46.5°
B - Segment: 506-523 - Tilt: 25.7°
B - Segment: 539-555 - Tilt: 27.5°
B - Segment: 597-611 - Tilt: 22.6°
B - Segment: 637-655 - Tilt: 30.9°
B - Segment: 688-704 - Tilt: 27.4°
B - Segment: 728-745 - Tilt: 30.0°
B - Segment: 786-810 - Tilt: 26.4°
B - Segment: 854-871 - Tilt: 29.4°
B - Segment: 907-927 - Tilt: 7.1°
Structural assessment:
MAIDEN score = -55.3199
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]