E.coli OmpF porin in lipidic cubic phase: space group P1
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF00267
PDB ID: 3POX
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 42
Sequence positions:
A: 15-23|35-45|60-71|75-87|153-159|173-179|186-193|213-219|227-233|256-262|271-277|294-300|309-315|331-337
C: 695-703|716-725|740-751|755-766|833-840|852-859|866-873|893-899|906-913|936-942|950-957|974-980|988-995|1011-1018
B: 356-364|372-384|400-411|415-426|493-500|512-518|527-533|552-558|568-573|595-601|612-618|633-639|649-656|670-677
Tilt angles:
A - Segment: 15-23 - Tilt: 48.7°
A - Segment: 35-45 - Tilt: 50.5°
A - Segment: 60-71 - Tilt: 58.8°
A - Segment: 75-87 - Tilt: 57.0°
A - Segment: 153-159 - Tilt: 37.6°
A - Segment: 173-179 - Tilt: 38.4°
A - Segment: 186-193 - Tilt: 38.6°
A - Segment: 213-219 - Tilt: 35.0°
A - Segment: 227-233 - Tilt: 32.5°
A - Segment: 256-262 - Tilt: 32.9°
A - Segment: 271-277 - Tilt: 32.5°
A - Segment: 294-300 - Tilt: 31.2°
A - Segment: 309-315 - Tilt: 37.4°
A - Segment: 331-337 - Tilt: 36.3°
C - Segment: 695-703 - Tilt: 45.1°
C - Segment: 716-725 - Tilt: 51.0°
C - Segment: 740-751 - Tilt: 55.8°
C - Segment: 755-766 - Tilt: 56.6°
C - Segment: 833-840 - Tilt: 37.5°
C - Segment: 852-859 - Tilt: 39.6°
C - Segment: 866-873 - Tilt: 43.8°
C - Segment: 893-899 - Tilt: 40.0°
C - Segment: 906-913 - Tilt: 39.6°
C - Segment: 936-942 - Tilt: 37.2°
C - Segment: 950-957 - Tilt: 35.4°
C - Segment: 974-980 - Tilt: 31.7°
C - Segment: 988-995 - Tilt: 38.0°
C - Segment: 1011-1018 - Tilt: 38.7°
B - Segment: 356-364 - Tilt: 46.1°
B - Segment: 372-384 - Tilt: 49.7°
B - Segment: 400-411 - Tilt: 55.9°
B - Segment: 415-426 - Tilt: 57.2°
B - Segment: 493-500 - Tilt: 33.8°
B - Segment: 512-518 - Tilt: 37.5°
B - Segment: 527-533 - Tilt: 35.6°
B - Segment: 552-558 - Tilt: 34.8°
B - Segment: 568-573 - Tilt: 36.0°
B - Segment: 595-601 - Tilt: 34.8°
B - Segment: 612-618 - Tilt: 35.2°
B - Segment: 633-639 - Tilt: 32.5°
B - Segment: 649-656 - Tilt: 35.5°
B - Segment: 670-677 - Tilt: 36.7°
Structural assessment:
MAIDEN score = 1072.8897
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]