Metarhodopsin II in complex with a C-terminal peptide derived from the Galpha subunit of transducin
Organism: Bos taurus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00001
PDB ID: 3PQR
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.0 Å
Number of TM segments = 7
Sequence positions:
A: 35-52|78-100|111-133|154-169|207-225|254-270|289-303
Tilt angles:
A - Segment: 35-52 - Tilt: 42.5°
A - Segment: 78-100 - Tilt: 52.8°
A - Segment: 111-133 - Tilt: 52.8°
A - Segment: 154-169 - Tilt: 22.1°
A - Segment: 207-225 - Tilt: 39.4°
A - Segment: 254-270 - Tilt: 16.5°
A - Segment: 289-303 - Tilt: 19.7°
Structural assessment:
MAIDEN score = -49.3200
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]