Metarhodopsin II
Organism: Bos taurus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00001
PDB ID: 3PXO
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.0 Å
Number of TM segments = 7
Sequence positions:
A: 45-60|76-92|111-129|159-177|198-217|252-274|291-309
Tilt angles:
A - Segment: 45-60 - Tilt: 18.7°
A - Segment: 76-92 - Tilt: 17.1°
A - Segment: 111-129 - Tilt: 38.2°
A - Segment: 159-177 - Tilt: 15.8°
A - Segment: 198-217 - Tilt: 46.8°
A - Segment: 252-274 - Tilt: 45.4°
A - Segment: 291-309 - Tilt: 39.2°
Structural assessment:
MAIDEN score = -26.6872
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]